Hi mike, sorry this is a response 6-months later so you probably already found one or gave up.
There are 2 shops in Rochester: The Reptile Guys and Reptile Showcase.
Reptile Guys is clean and they have a gorgeous collection of healthy animals. You pay for it, but you know you're getting a good animal. They seem to specialize in snakes, chameleons and beardies but have a TON of variety.
Reptile Showcase has some animals that are usually of some questionable health, most look like WC imports. He has a great collection of books and new/2nd hand supplies.
I also breed geckos and know of a few others in Cuse/Roc/Buff area. What are you looking for?